HL_6ZJ3_016

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

6ZJ3|1|LD|G|700

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_016 not in the Motif Atlas

Geometric match to HL_7RQB_007

Geometric discrepancy: 0.3612

The information below is about HL_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02862.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

6ZJ3|1|LD|C|696
6ZJ3|1|LD|U|697
6ZJ3|1|LD|C|698
6ZJ3|1|LD|C|699
6ZJ3|1|LD|G|700
6ZJ3|1|LD|G|701

Current chains

Chain LD

LSU rRNA chain 3

Nearby chains

Chain LK

LSU rRNA chain 10

Chain LT

Ribosomal protein uL6

Chain LZ

Ribosomal protein eL14

Chain Lg

Ribosomal protein eL20