HL_6ZJ3_025
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CC(PSU)CAG
- Length
- 6 nucleotides
- Bulged bases
- 6ZJ3|1|LE|C|1259, 6ZJ3|1|LE|C|1261, 6ZJ3|1|LE|A|1262
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_025 not in the Motif Atlas
- Homologous match to HL_8C3A_022
- Geometric discrepancy: 0.1311
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6ZJ3|1|LE|C|1258
6ZJ3|1|LE|C|1259
6ZJ3|1|LE|PSU|1260
6ZJ3|1|LE|C|1261
6ZJ3|1|LE|A|1262
6ZJ3|1|LE|G|1263
Current chains
- Chain LE
- LSU rRNA chain 4
Nearby chains
- Chain L4
- Ribosomal protein eL43
- Chain LB
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain La
- Ribosomal protein uL15
- Chain Lq
- Ribosomal protein eL29
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