HL_6ZJ3_028

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GGGUGCUC

Length

8 nucleotides

Bulged bases

6ZJ3|1|LF|C|1522, 6ZJ3|1|LF|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_028 not in the Motif Atlas

Homologous match to HL_5TBW_026

Geometric discrepancy: 0.111

The information below is about HL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6ZJ3|1|LF|G|1517
6ZJ3|1|LF|G|1518
6ZJ3|1|LF|G|1519
6ZJ3|1|LF|U|1520
6ZJ3|1|LF|G|1521
6ZJ3|1|LF|C|1522
6ZJ3|1|LF|U|1523
6ZJ3|1|LF|C|1524

Current chains

Chain LF

LSU rRNA chain 5

Nearby chains

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain LO

5S ribosomal RNA; 5S rRNA

Chain Lr

Ribosomal protein uL30

Chain Lu

Ribosomal protein eL32

Chain Lv

Ribosomal protein eL33