HL_6ZJ3_033

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

AGCG(PSU)U*U

Length

7 nucleotides

Bulged bases

6ZJ3|1|LF|G|1922

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_033 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3169

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6ZJ3|1|LF|A|1921
6ZJ3|1|LF|G|1922
6ZJ3|1|LF|C|1924
6ZJ3|1|LF|G|1925
6ZJ3|1|LF|PSU|1926
6ZJ3|1|LF|U|1927
*
6ZJ3|1|LF|U|1927

Current chains

Chain LF

LSU rRNA chain 5

Nearby chains

Chain L1

Ribosomal protein eL39

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain Lf

Ribosomal protein eL19

Chain Li

Ribosomal protein uL22