HL_6ZJ3_034
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GGUAAGUUC
- Length
- 9 nucleotides
- Bulged bases
- 6ZJ3|1|LF|U|1965
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_034 not in the Motif Atlas
- Geometric match to HL_4WF9_004
- Geometric discrepancy: 0.3256
- The information below is about HL_4WF9_004
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_98423.3
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
6ZJ3|1|LF|G|1958
6ZJ3|1|LF|G|1959
6ZJ3|1|LF|U|1960
6ZJ3|1|LF|A|1961
6ZJ3|1|LF|A|1962
6ZJ3|1|LF|G|1963
6ZJ3|1|LF|U|1964
6ZJ3|1|LF|U|1965
6ZJ3|1|LF|C|1966
Current chains
- Chain LF
- LSU rRNA chain 5
Nearby chains
- Chain LB
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lb
- Ribosomal protein eL15
- Chain Ly
- Ribosomal protein eL37
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