HL_6ZJ3_038
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UGACAGA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_038 not in the Motif Atlas
- Geometric match to HL_4V9F_039
- Geometric discrepancy: 0.251
- The information below is about HL_4V9F_039
- Detailed Annotation
- Other HL
- Broad Annotation
- Other HL
- Motif group
- HL_67772.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
6ZJ3|1|LG|U|2164
6ZJ3|1|LG|G|2165
6ZJ3|1|LG|A|2166
6ZJ3|1|LG|C|2167
6ZJ3|1|LG|A|2168
6ZJ3|1|LG|G|2169
6ZJ3|1|LG|A|2170
Current chains
- Chain LG
- LSU rRNA chain 6
Nearby chains
- Chain L5
- Ribosomal protein eL42
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lf
- Ribosomal protein eL19
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