HL_6ZJ3_046
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CCAGCUG
- Length
- 7 nucleotides
- Bulged bases
- 6ZJ3|1|LH|U|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_046 not in the Motif Atlas
- Homologous match to HL_5TBW_047
- Geometric discrepancy: 0.1666
- The information below is about HL_5TBW_047
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
6ZJ3|1|LH|C|2652
6ZJ3|1|LH|C|2653
6ZJ3|1|LH|A|2654
6ZJ3|1|LH|G|2655
6ZJ3|1|LH|C|2656
6ZJ3|1|LH|U|2657
6ZJ3|1|LH|G|2658
Current chains
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain Lb
- Ribosomal protein eL15
Coloring options: