HL_6ZJ3_048
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- G(PSU)A(A2M)C(PSU)AUGAC
- Length
- 11 nucleotides
- Bulged bases
- 6ZJ3|1|LH|C|2745
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_048 not in the Motif Atlas
- Homologous match to HL_5TBW_049
- Geometric discrepancy: 0.4644
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6ZJ3|1|LH|G|2741
6ZJ3|1|LH|PSU|2742
6ZJ3|1|LH|A|2743
6ZJ3|1|LH|A2M|2744
6ZJ3|1|LH|C|2745
6ZJ3|1|LH|PSU|2746
6ZJ3|1|LH|A|2747
6ZJ3|1|LH|U|2748
6ZJ3|1|LH|G|2749
6ZJ3|1|LH|A|2750
6ZJ3|1|LH|C|2751
Current chains
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
- Chain S2
- Transfer RNA; tRNA
- Chain S3
- Transfer RNA; tRNA
- Chain S5
- A-site tRNA
Coloring options: