HL_6ZJ3_057
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- C(OMU)CAGUACG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_057 not in the Motif Atlas
- Homologous match to HL_8C3A_059
- Geometric discrepancy: 0.194
- The information below is about HL_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34636.1
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6ZJ3|1|LI|C|3299
6ZJ3|1|LI|OMU|3300
6ZJ3|1|LI|C|3301
6ZJ3|1|LI|A|3302
6ZJ3|1|LI|G|3303
6ZJ3|1|LI|U|3304
6ZJ3|1|LI|A|3305
6ZJ3|1|LI|C|3306
6ZJ3|1|LI|G|3307
Current chains
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain L4
- Ribosomal protein eL43
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain La
- Ribosomal protein uL15
- Chain Le
- Ribosomal protein eL18
- Chain Lh
- Ribosomal protein eL21
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