HL_6ZJ3_059
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CUGGAU(A2M)UCG
- Length
- 10 nucleotides
- Bulged bases
- 6ZJ3|1|LI|U|3362, 6ZJ3|1|LI|U|3368
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_059 not in the Motif Atlas
- Geometric match to HL_5TBW_060
- Geometric discrepancy: 0.2231
- The information below is about HL_5TBW_060
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
6ZJ3|1|LI|C|3361
6ZJ3|1|LI|U|3362
6ZJ3|1|LI|G|3363
6ZJ3|1|LI|G|3364
6ZJ3|1|LI|A|3365
6ZJ3|1|LI|U|3366
6ZJ3|1|LI|A2M|3367
6ZJ3|1|LI|U|3368
6ZJ3|1|LI|C|3369
6ZJ3|1|LI|G|3370
Current chains
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain L4
- Ribosomal protein eL43
- Chain LB
- Large subunit ribosomal RNA; LSU rRNA
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- Ribosomal protein eL13
- Chain La
- Ribosomal protein uL15
- Chain Le
- Ribosomal protein eL18
- Chain Lx
- Ribosomal protein eL36
Coloring options: