HL_6ZJ3_061

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CGCAGCCG

Length

8 nucleotides

Bulged bases

6ZJ3|1|LI|G|3485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_061 not in the Motif Atlas

Geometric match to HL_5TBW_062

Geometric discrepancy: 0.1911

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6ZJ3|1|LI|C|3484
6ZJ3|1|LI|G|3485
6ZJ3|1|LI|C|3486
6ZJ3|1|LI|A|3487
6ZJ3|1|LI|G|3488
6ZJ3|1|LI|C|3489
6ZJ3|1|LI|C|3490
6ZJ3|1|LI|G|3491

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain L2

Ribosomal protein eL40

Chain LJ

Large subunit ribosomal RNA; LSU rRNA

Chain LT

Ribosomal protein uL6