HL_6ZJ3_065
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CGAGCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_065 not in the Motif Atlas
- Homologous match to HL_8C3A_067
- Geometric discrepancy: 0.1576
- The information below is about HL_8C3A_067
- Detailed Annotation
- Ribsomal LSU H95
- Broad Annotation
- Ribsomal LSU H95
- Motif group
- HL_65794.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6ZJ3|1|LJ|C|3658
6ZJ3|1|LJ|G|3659
6ZJ3|1|LJ|A|3660
6ZJ3|1|LJ|G|3661
6ZJ3|1|LJ|C|3662
6ZJ3|1|LJ|G|3663
Current chains
- Chain LJ
- LSU rRNA chain 9
Nearby chains
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LG
- LSU rRNA chain 6
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LM
- LSU rRNA chain 12
- Chain Lf
- Ribosomal protein eL19
- Chain Lj
- Ribosomal protein eL22
- Chain Lt
- Ribosomal protein eL31
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