HL_6ZJ3_066
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- C(PSU)GGACGCAUCUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 6ZJ3|1|LJ|G|3706, 6ZJ3|1|LJ|C|3710, 6ZJ3|1|LJ|U|3712
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_066 not in the Motif Atlas
- Geometric match to HL_5J7L_199
- Geometric discrepancy: 0.1784
- The information below is about HL_5J7L_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_74055.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
6ZJ3|1|LJ|C|3700
6ZJ3|1|LJ|PSU|3701
6ZJ3|1|LJ|G|3702
6ZJ3|1|LJ|G|3703
6ZJ3|1|LJ|A|3704
6ZJ3|1|LJ|C|3705
6ZJ3|1|LJ|G|3706
6ZJ3|1|LJ|C|3707
6ZJ3|1|LJ|A|3708
6ZJ3|1|LJ|U|3709
6ZJ3|1|LJ|C|3710
6ZJ3|1|LJ|U|3711
6ZJ3|1|LJ|U|3712
6ZJ3|1|LJ|A|3713
6ZJ3|1|LJ|A|3714
6ZJ3|1|LJ|G|3715
Current chains
- Chain LJ
- LSU rRNA chain 9
Nearby chains
- Chain L2
- Ribosomal protein eL40
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LT
- Ribosomal protein uL6
- Chain LW
- Ribosomal protein uL13
Coloring options: