HL_6ZJ3_078

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_078 not in the Motif Atlas

Geometric match to HL_3P22_001

Geometric discrepancy: 0.1936

The information below is about HL_3P22_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6ZJ3|1|S1|C|296
6ZJ3|1|S1|G|297
6ZJ3|1|S1|C|298
6ZJ3|1|S1|A|299
6ZJ3|1|S1|A|300
6ZJ3|1|S1|G|301

Current chains

Chain S1

18S rRNA

Nearby chains

Chain Sg

Ribosomal protein eSEug1