HL_6ZJ3_082

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

A(PSU)CAGGGU

Length

8 nucleotides

Bulged bases

6ZJ3|1|S1|C|466

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_082 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.332

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6ZJ3|1|S1|A|464
6ZJ3|1|S1|PSU|465
6ZJ3|1|S1|C|466
6ZJ3|1|S1|A|467
6ZJ3|1|S1|G|468
6ZJ3|1|S1|G|469
6ZJ3|1|S1|G|470
6ZJ3|1|S1|U|471

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SD

Ribosomal protein uS4

Chain SF

Ribosomal protein uS5

Chain SJ

Ribosomal protein uS8

Chain SP

Ribosomal protein uS12

Chain SU

Ribosomal protein uS17