HL_6ZJ3_083
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CCUGAGAGACGG
- Length
- 12 nucleotides
- Bulged bases
- 6ZJ3|1|S1|G|500
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_083 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.0757
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6ZJ3|1|S1|C|490
6ZJ3|1|S1|C|491
6ZJ3|1|S1|U|492
6ZJ3|1|S1|G|493
6ZJ3|1|S1|A|494
6ZJ3|1|S1|G|495
6ZJ3|1|S1|A|496
6ZJ3|1|S1|G|497
6ZJ3|1|S1|A|498
6ZJ3|1|S1|C|499
6ZJ3|1|S1|G|500
6ZJ3|1|S1|G|501
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain SE
- Ribosomal protein eS4
- Chain SG
- Ribosomal protein eS6
- Chain SK
- Ribosomal protein eS8
- Chain SZ
- Ribosomal protein eS24
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