HL_6ZJ3_085

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

AAAGACAGUCU

Length

11 nucleotides

Bulged bases

6ZJ3|1|S1|A|549, 6ZJ3|1|S1|C|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_085 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.2973

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6ZJ3|1|S1|A|547
6ZJ3|1|S1|A|548
6ZJ3|1|S1|A|549
6ZJ3|1|S1|G|550
6ZJ3|1|S1|A|551
6ZJ3|1|S1|C|552
6ZJ3|1|S1|A|553
6ZJ3|1|S1|G|554
6ZJ3|1|S1|U|555
6ZJ3|1|S1|C|556
6ZJ3|1|S1|U|557

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SZ

Ribosomal protein eS24