HL_6ZJ3_088

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CAGCUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_088 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.1105

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZJ3|1|S1|C|673
6ZJ3|1|S1|A|674
6ZJ3|1|S1|G|675
6ZJ3|1|S1|C|676
6ZJ3|1|S1|U|677
6ZJ3|1|S1|G|678

Current chains

Chain S1

18S rRNA

Nearby chains

Chain S5

A-site tRNA

Chain SP

Ribosomal protein uS12