HL_6ZJ3_096
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_096 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.1745
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6ZJ3|1|S1|A|1297
6ZJ3|1|S1|G|1298
6ZJ3|1|S1|G|1299
6ZJ3|1|S1|U|1300
6ZJ3|1|S1|G|1301
6ZJ3|1|S1|A|1302
6ZJ3|1|S1|A|1303
6ZJ3|1|S1|A|1304
6ZJ3|1|S1|U|1305
6ZJ3|1|S1|U|1306
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain S4
- Transfer RNA; tRNA
- Chain S5
- A-site tRNA
- Chain SO
- Ribosomal protein uS11
- Chain Sb
- Ribosomal protein eS26
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