HL_6ZJ3_100

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_100 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.077

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZJ3|1|S1|A|1493
6ZJ3|1|S1|G|1494
6ZJ3|1|S1|A|1495
6ZJ3|1|S1|A|1496
6ZJ3|1|S1|A|1497
6ZJ3|1|S1|U|1498

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SF

Ribosomal protein uS5

Chain Sb

Ribosomal protein eS26