HL_6ZJ3_101

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UCGCAA(OMG)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_101 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3342

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6ZJ3|1|S1|U|1530
6ZJ3|1|S1|C|1531
6ZJ3|1|S1|G|1532
6ZJ3|1|S1|C|1533
6ZJ3|1|S1|A|1534
6ZJ3|1|S1|A|1535
6ZJ3|1|S1|OMG|1536
6ZJ3|1|S1|G|1537

Current chains

Chain S1

18S rRNA

Nearby chains

Chain L3

Ribosomal protein eL41

Chain L5

Ribosomal protein eL42

Chain LH

Large subunit ribosomal RNA; LSU rRNA