HL_6ZJ3_102
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GAC(B8N)CAACGC
- Length
- 10 nucleotides
- Bulged bases
- 6ZJ3|1|S1|G|1606
- QA status
- Modified nucleotides: B8N
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_102 not in the Motif Atlas
- Homologous match to HL_8C3A_217
- Geometric discrepancy: 0.1093
- The information below is about HL_8C3A_217
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6ZJ3|1|S1|G|1598
6ZJ3|1|S1|A|1599
6ZJ3|1|S1|C|1600
6ZJ3|1|S1|B8N|1601
6ZJ3|1|S1|C|1602
6ZJ3|1|S1|A|1603
6ZJ3|1|S1|A|1604
6ZJ3|1|S1|C|1605
6ZJ3|1|S1|G|1606
6ZJ3|1|S1|C|1607
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain S2
- Transfer RNA; tRNA
- Chain S3
- Transfer RNA; tRNA
- Chain SL
- Ribosomal protein uS9
- Chain SM
- Ribosomal protein uS10
- Chain SS
- Ribosomal protein uS14
- Chain SW
- Ribosomal protein uS19
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