HL_6ZJ3_124
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- (OMC)UUGGGAC(OMU)G
- Length
- 10 nucleotides
- Bulged bases
- 6ZJ3|1|LC|G|488, 6ZJ3|1|LC|A|489, 6ZJ3|1|LC|C|490
- QA status
- Modified nucleotides: OMC, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_124 not in the Motif Atlas
- Homologous match to HL_8C3A_008
- Geometric discrepancy: 0.1657
- The information below is about HL_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
6ZJ3|1|LC|OMC|483
6ZJ3|1|LC|U|484
6ZJ3|1|LC|U|485
6ZJ3|1|LC|G|486
6ZJ3|1|LC|G|487
6ZJ3|1|LC|G|488
6ZJ3|1|LC|A|489
6ZJ3|1|LC|C|490
6ZJ3|1|LC|OMU|491
6ZJ3|1|LC|G|492
Current chains
- Chain LC
- LSU rRNA chain 2
Nearby chains
- Chain L4
- Ribosomal protein eL43
- Chain LB
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- Ribosomal protein eL13
- Chain La
- Ribosomal protein uL15
- Chain Lb
- Ribosomal protein eL15
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