HL_6ZJ3_126
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UCUCG(1MA)AAC(A2M)
- Length
- 10 nucleotides
- Bulged bases
- 6ZJ3|1|LE|C|934
- QA status
- Modified nucleotides: 1MA, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_126 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.1086
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6ZJ3|1|LE|U|926
6ZJ3|1|LE|C|927
6ZJ3|1|LE|U|928
6ZJ3|1|LE|C|929
6ZJ3|1|LE|G|930
6ZJ3|1|LE|1MA|931
6ZJ3|1|LE|A|932
6ZJ3|1|LE|A|933
6ZJ3|1|LE|C|934
6ZJ3|1|LE|A2M|935
Current chains
- Chain LE
- LSU rRNA chain 4
Nearby chains
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LQ
- Ribosomal protein uL3
- Chain La
- Ribosomal protein uL15
- Chain Lu
- Ribosomal protein eL32
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