HL_6ZJ3_128

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UGAAAG(OMG)

Length

7 nucleotides

Bulged bases

6ZJ3|1|LE|A|1213, 6ZJ3|1|LE|G|1216

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_128 not in the Motif Atlas

Geometric match to HL_8VTW_023

Geometric discrepancy: 0.123

The information below is about HL_8VTW_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

6ZJ3|1|LE|U|1211
6ZJ3|1|LE|G|1212
6ZJ3|1|LE|A|1213
6ZJ3|1|LE|A|1214
6ZJ3|1|LE|A|1215
6ZJ3|1|LE|G|1216
6ZJ3|1|LE|OMG|1217

Current chains

Chain LE

LSU rRNA chain 4

Nearby chains

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain LP

Ribosomal protein uL2

Chain Ly

Ribosomal protein eL37