Motif HL_87954.1 Version HL_87954.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_024 | 4WF9 | 0.2048 | 2 | X | LSU rRNA | A | 824 | G | 825 | A | 827 | A | 828 | U | 830 | cWW | tSW |
| 2 | HL_5J7L_156 | 5J7L | 0.0404 | 2 | DA | LSU rRNA | U | 779 | G | 780 | A | 782 | A | 783 | G | 785 | cWW | tSW |
| 3 | HL_8VTW_023 | 8VTW | 0.0000 | 2 | 1A | LSU rRNA | U | 779 | G | 780 | A | 782 | A | 783 | G | 785 | cWW | tSW |
| 4 | HL_4V9F_025 | 4V9F | 0.0770 | 2 | 0 | LSU rRNA | U | 872 | G | 873 | A | 875 | A | 876 | G | 878 | cWW | tSW |
| 5 | HL_5J7L_025 | 5J7L | 0.4072 | 2 | AA | SSU rRNA | G | 1134 | U | 1135 | C | 1137 | G | 1138 | C | 1140 | ncWW | ntSW |
| 6 | HL_4LFB_026 | 4LFB | 0.4959 | 2 | A | SSU rRNA | G | 1134 | U | 1135 | C | 1137 | G | 1138 | C | 1140 | cWW | tSW |
| 7 | HL_4V9F_005 | 4V9F | 0.4694 | 2 | 0 | LSU rRNA | C | 136 | U | 137 | C | 139 | G | 140 | G | 142 | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAGG | 2 |
| AGAAAUU | 1 |
| UGAAAAG | 1 |
| GUCCGGC | 1 |
| GUUCGGC | 1 |
| CUUCGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAG | 2 |
| GAAAU | 1 |
| GAAAA | 1 |
| UCCGG | 1 |
| UUCGG | 1 |
| UUCGC | 1 |
- Annotations
-
- (7)
- Basepair signature
- cWW-tSW-F
- Heat map statistics
- Min 0.04 | Avg 0.31 | Max 0.58
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