HL_6ZJ3_130

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GUUG(OMC)

Length

5 nucleotides

Bulged bases

6ZJ3|1|LH|U|2599

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_130 not in the Motif Atlas

Homologous match to HL_8C3A_045

Geometric discrepancy: 0.2903

The information below is about HL_8C3A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6ZJ3|1|LH|G|2598
6ZJ3|1|LH|U|2599
6ZJ3|1|LH|U|2600
6ZJ3|1|LH|G|2601
6ZJ3|1|LH|OMC|2602

Current chains

Chain LH

LSU rRNA chain 7

Nearby chains

Chain LJ

Large subunit ribosomal RNA; LSU rRNA

Chain LM

LSU rRNA chain 12

Chain LN

LSU rRNA chain 13

Chain Lf

Ribosomal protein eL19

Chain Lm

Ribosomal protein eL24

Chain S1

Small subunit ribosomal RNA; SSU rRNA