HL_6ZJ3_140

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CUCAGUCGGUAGAG

Length

14 nucleotides

Bulged bases

6ZJ3|1|S4|U|16, 6ZJ3|1|S4|C|17, 6ZJ3|1|S4|G|18, 6ZJ3|1|S4|G|19, 6ZJ3|1|S4|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_140 not in the Motif Atlas

Homologous match to HL_5E6M_001

Geometric discrepancy: 0.4226

The information below is about HL_5E6M_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76195.1

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZJ3|1|S4|C|11
6ZJ3|1|S4|U|12
6ZJ3|1|S4|C|13
6ZJ3|1|S4|A|14
6ZJ3|1|S4|G|15
6ZJ3|1|S4|U|16
6ZJ3|1|S4|C|17
6ZJ3|1|S4|G|18
6ZJ3|1|S4|G|19
6ZJ3|1|S4|U|20
6ZJ3|1|S4|A|21
6ZJ3|1|S4|G|22
6ZJ3|1|S4|A|23
6ZJ3|1|S4|G|24

Current chains

Chain S4

E-tRNA

Nearby chains

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain SO

Ribosomal protein uS11