HL_6ZM5_052

3D structure

PDB id

6ZM5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GAUAAACCCC

Length

10 nucleotides

Bulged bases

6ZM5|1|AA|C|1225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZM5_052 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1792

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

6ZM5|1|AA|G|1217
6ZM5|1|AA|A|1218
6ZM5|1|AA|U|1219
6ZM5|1|AA|A|1220
6ZM5|1|AA|A|1221
6ZM5|1|AA|A|1222
6ZM5|1|AA|C|1223
6ZM5|1|AA|C|1224
6ZM5|1|AA|C|1225
6ZM5|1|AA|C|1226

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AG

28S ribosomal protein S9, mitochondrial

Chain AH

28S ribosomal protein S10, mitochondrial

Chain w

Transfer RNA; tRNA

Chain x

Transfer RNA; tRNA