RNA 3D Hub //

6ZM5 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6ZM5_0011/A/1722:1729No text annotation
geometric
HL_4WF9_006
HL_48677.1
HL_6ZM5_0021/A/1746:1752No text annotation
geometric
HL_7A0S_008
HL_76371.2
HL_6ZM5_0031/A/1786:1791GNRA
homologous
HL_4WF9_015
HL_34789.4
HL_6ZM5_0041/A/1831:1839No text annotation
homologous
HL_8VTW_016
NA
HL_6ZM5_0051/A/1847:1856T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
NA
HL_6ZM5_0061/A/1884:1889No text annotation
geometric
HL_5TBW_006
NA
HL_6ZM5_0071/A/1934:1940GNRA related
geometric
HL_5J7L_179
NA
HL_6ZM5_0081/A/1954:1963No text annotation
homologous
HL_4WF9_023
HL_50204.1
HL_6ZM5_0091/A/1988:1996No text annotation
geometric
HL_5TBW_021
NA
HL_6ZM5_0101/A/2035:2040No text annotation
homologous
HL_4WF9_025
HL_27530.1
HL_6ZM5_0111/A/2064:2075No text annotation
HL_6ZM5_0121/A/2107:2114GNRA
homologous
HL_4WF9_027
HL_34789.4
HL_6ZM5_0131/A/2129:2136No text annotation
homologous
HL_5J7L_160
NA
HL_6ZM5_0141/A/2175:2185No text annotation
homologous
HL_6PRV_001
HL_20174.1
HL_6ZM5_0151/A/2202:2209GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_98423.3
HL_6ZM5_0161/A/2279:2286No text annotation
geometric
HL_1KH6_003
HL_33487.1
HL_6ZM5_0171/A/2319:2324UNCG variation
geometric
HL_6DME_002
HL_61337.4
HL_6ZM5_0181/A/2352:2361No text annotation
HL_6ZM5_0191/A/2400:2403Mini UNCG
geometric
HL_5F9R_002
NA
HL_6ZM5_0201/A/2428:2435No text annotation
homologous
HL_4WF9_038
HL_28592.2
HL_6ZM5_0211/A/2497:2507No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_6ZM5_0221/A/2518:2532No text annotation
HL_6ZM5_0231/A/2555:2560No text annotation
geometric
HL_5TBW_006
NA
HL_6ZM5_0241/A/2574:2583No text annotation
homologous
HL_9DFE_046
HL_82185.1
HL_6ZM5_0251/A/2612:2620No text annotation
homologous
HL_7A0S_048
HL_61418.2
HL_6ZM5_0261/A/2690:2699No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_6ZM5_0271/A/2812:2820No text annotation
homologous
HL_4WF9_049
HL_11974.2
HL_6ZM5_0281/A/2828:2840No text annotation
HL_6ZM5_0291/A/2862:2870No text annotation
geometric
HL_2ZZM_002
HL_33487.1
HL_6ZM5_0301/A/2902:2907GNRA
geometric
HL_5B2P_001
HL_34789.4
HL_6ZM5_0311/A/2958:2966No text annotation
homologous
HL_4WF9_056
HL_52011.1
HL_6ZM5_0321/A/3015:3022GNRA variation
homologous
HL_4WF9_057
HL_46665.2
HL_6ZM5_0331/A/3038:3044No text annotation
homologous
HL_4WF9_058
HL_48677.1
HL_6ZM5_0341/A/3081:3086GNRA
homologous
HL_5J7L_196
NA
HL_6ZM5_0351/A/3126:3131GNRA
geometric
HL_5B2T_003
HL_34789.4
HL_6ZM5_0361/A/3154:3159No text annotation
geometric
HL_5FMZ_001
HL_19413.2
HL_6ZM5_0371/A/3176:3193No text annotation
geometric
HL_7A0S_074
NA
HL_6ZM5_0381/A/3216:3224No text annotation
geometric
HL_7RQB_068
NA
HL_6ZM5_0391/AA/654:664No text annotation
geometric
HL_4LFB_001
HL_73535.1
HL_6ZM5_0401/AA/701:708No text annotation
HL_6ZM5_0411/AA/734:740Pseudoknot geometry
geometric
HL_4AOB_001
HL_30680.5
HL_6ZM5_0421/AA/768:773GNRA
geometric
HL_5TBW_019
NA
HL_6ZM5_0431/AA/792:796No text annotation
geometric
HL_6U8D_003
HL_32346.6
HL_6ZM5_0441/AA/804:809No text annotation
HL_6ZM5_0451/AA/842:847GNRA
geometric
HL_4WF9_020
HL_34789.4
HL_6ZM5_0461/AA/894:899GNRA
geometric
HL_1G1X_003
NA
HL_6ZM5_0471/AA/989:998No text annotation
geometric
HL_4LFB_015
HL_38491.2
HL_6ZM5_0481/AA/1023:1028GNRA
geometric
HL_5J7L_016
NA
HL_6ZM5_0491/AA/1074:1084No text annotation
geometric
HL_4LFB_017
HL_38491.2
HL_6ZM5_0501/AA/1115:1126No text annotation
HL_6ZM5_0511/AA/1150:1155No text annotation
geometric
HL_4V9F_003
HL_75660.8
HL_6ZM5_0521/AA/1217:1226No text annotation
geometric
HL_1WZ2_007
HL_75660.8
HL_6ZM5_0531/AA/1281:1287No text annotation
geometric
HL_5U3G_001
HL_75660.8
HL_6ZM5_0541/AA/1310:1315Externally structured
geometric
HL_8C3A_022
NA
HL_6ZM5_0551/AA/1373:1379No text annotation
geometric
HL_5TBW_006
NA
HL_6ZM5_0561/AA/1399:1407T-loop with 2 bulged bases not stacked
geometric
HL_4FRN_005
NA
HL_6ZM5_0571/AA/1440:1450No text annotation
geometric
HL_5J7L_029
NA
HL_6ZM5_0581/AA/1522:1528No text annotation
geometric
HL_5M3H_001
NA
HL_6ZM5_0591/AA/1580:1585GNRA variation
geometric
HL_4V88_222
NA
HL_6ZM5_0601/B/1613:1622tRNA D-loop
geometric
HL_5B63_003
HL_20490.1
HL_6ZM5_0611/B/1630:1638Anticodon loop related
geometric
HL_5T83_002
HL_81376.3
HL_6ZM5_0621/B/1651:1658No text annotation
geometric
HL_5TBW_076
NA
HL_6ZM5_0641/w/31:39tRNA anticodon loop
homologous
HL_4YCO_002
HL_81376.3
HL_6ZM5_0651/w/53:61No text annotation
geometric
HL_4V9F_003
HL_75660.8
HL_6ZM5_0661/x/13:22tRNA D-loop
homologous
HL_5B63_003
HL_20490.1
HL_6ZM5_0671/x/31:39tRNA anticodon loop
homologous
HL_4TUE_034
NA

Problematic loops

#loop idProblemSequence
HL_6ZM5_063No text annotation
HL_6ZM5_068T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6ZM5_0011/A/1672:1678,
1/A/1797:1816		No text annotation
IL_6ZM5_0021/A/1682:1683,
1/A/1768:1770		Single bulged A
homologous
IL_7A0S_002
IL_14190.2
IL_6ZM5_0031/A/1739:1745,
1/A/1753:1758		7x6 Sarcin-Ricin; G-bulge
geometric
IL_4V9F_106
IL_02666.1
IL_6ZM5_0041/A/1845:1847,
1/A/1856:1858		Isolated non-canonical cWW pair
geometric
IL_5J7L_257
NA
IL_6ZM5_0051/A/1877:1879,
1/A/1895:1897		Isolated non-canonical cWW pair
geometric
IL_3GM7_002
IL_01003.4
IL_6ZM5_0061/A/1880:1883,
1/A/1890:1894		No text annotation
IL_6ZM5_0071/A/1904:1906,
1/A/2016:2018		Isolated non-canonical cWW pair
homologous
IL_4WF9_020
IL_01003.4
IL_6ZM5_0081/A/1906:1910,
1/A/2009:2016		tHW-tHW cross-strand stack
geometric
IL_7RQB_018
NA
IL_6ZM5_0091/A/1913:1915,
1/A/2004:2006		Isolated non-canonical cWW pair
geometric
IL_5TBW_079
NA
IL_6ZM5_0101/A/1925:1927,
1/A/1977:1979		Isolated non-canonical cWW contact
geometric
IL_5UNE_001
IL_87720.1
IL_6ZM5_0111/A/1929:1930,
1/A/1973:1975		Single bulged A
geometric
IL_5J7L_261
NA
IL_6ZM5_0121/A/1948:1951,
1/A/1966:1968		Major groove platform with extra cWW
homologous
IL_7A0S_019
IL_36931.2
IL_6ZM5_0131/A/1985:1987,
1/A/1997:2001		Multiple bulged bases
geometric
IL_5J7L_265
NA
IL_6ZM5_0141/A/2046:2048,
1/A/2091:2094		No text annotation
geometric
IL_4N0T_004
IL_32983.2
IL_6ZM5_0151/A/2057:2063,
1/A/2076:2082		No text annotation
geometric
IL_5XWG_002
IL_74768.1
IL_6ZM5_0161/A/2145:2147,
1/A/2254:2255		Single bulged C
homologous
IL_5J7L_276
NA
IL_6ZM5_0171/A/2149:2153,
1/A/2248:2252		UAA/GAN
homologous
IL_4WF9_036
IL_08938.1
IL_6ZM5_0181/A/2168:2170,
1/A/2190:2192		Isolated near basepair
geometric
IL_2ZI0_001
IL_42997.5
IL_6ZM5_0191/A/2170:2173,
1/A/2187:2190		No text annotation
geometric
IL_5D8H_002
IL_28482.1
IL_6ZM5_0201/A/2197:2200,
1/A/2211:2212		No text annotation
homologous
IL_6PRV_002
NA
IL_6ZM5_0211/A/2306:2313,
1/A/2674:2680		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_6ZM5_0221/A/2329:2333,
1/A/2441:2448		No text annotation
IL_6ZM5_0231/A/2349:2351,
1/A/2362:2364		No text annotation
IL_6ZM5_1051/A/2377:2381,
1/A/2411:2419		No text annotation
IL_6ZM5_1061/A/2384:2400,
1/A/2403:2408		No text annotation
IL_6ZM5_0241/A/2456:2461,
1/A/2666:2668		No text annotation
IL_6ZM5_0251/A/2467:2469,
1/A/2658:2660		Isolated tWW turn
homologous
IL_7A0S_060
IL_10432.1
IL_6ZM5_0261/A/2470:2473,
1/A/2656:2657		Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_6ZM5_1071/A/2470:2478,
1/A/2653:2657		No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_6ZM5_0271/A/2473:2478,
1/A/2653:2656		Intercalated tWH
geometric
IL_5J7L_307
NA
IL_6ZM5_0281/A/2478:2487,
1/A/2648:2653		No text annotation
IL_6ZM5_0291/A/2490:2491,
1/A/2643:2645		Single bulged A
homologous
IL_5J7L_312
NA
IL_6ZM5_0301/A/2548:2551,
1/A/2566:2567		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_6ZM5_0311/A/2552:2553,
1/A/2562:2565		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_6ZM5_0321/A/2596:2597,
1/A/2627:2630		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_6ZM5_0331/A/2597:2608,
1/A/2624:2627		No text annotation
IL_6ZM5_0341/A/2712:2715,
1/A/3104:3106		Major groove platform with extra pair
geometric
IL_5TBW_091
NA
IL_6ZM5_0351/A/2717:2719,
1/A/3099:3102		No text annotation
homologous
IL_5J7L_321
NA
IL_6ZM5_0361/A/2730:2732,
1/A/2929:2930		Single bulged U
homologous
IL_7A0S_075
IL_97561.5
IL_6ZM5_0371/A/2733:2734,
1/A/2925:2928		Minor groove platform
homologous
IL_5J7L_324
NA
IL_6ZM5_1081/A/2744:2746,
1/A/2802:2803		Minor groove platform
geometric
IL_8VTW_003
NA
IL_6ZM5_0391/A/2753:2759,
1/A/2787:2795		No text annotation
IL_6ZM5_0401/A/2849:2855,
1/A/2877:2889		No text annotation
IL_6ZM5_0411/A/2856:2860,
1/A/2872:2876		Double sheared with non-canonical cWW
geometric
IL_5J7L_274
NA
IL_6ZM5_0421/A/2940:2941,
1/A/2985:2987		Single stack bend
geometric
IL_4WF9_089
IL_15011.3
IL_6ZM5_0431/A/2941:2942,
1/A/2983:2985		Major groove platform
homologous
IL_7A0S_084
IL_48076.8
IL_6ZM5_0441/A/2943:2946,
1/A/2980:2982		Major groove platform with extra pair
geometric
IL_7RQB_093
NA
IL_6ZM5_0451/A/2946:2948,
1/A/2976:2980		Major groove minor groove platform with extra cWW
homologous
IL_4WF9_092
IL_36931.2
IL_6ZM5_0461/A/2953:2955,
1/A/2968:2971		No text annotation
geometric
IL_4P3T_002
NA
IL_6ZM5_0471/A/2955:2957,
1/A/2967:2968		Minor groove platform
geometric
IL_2QWY_009
IL_34520.3
IL_6ZM5_0481/A/2994:2995,
1/A/3067:3069		Major groove platform
homologous
IL_4WF9_094
IL_46637.2
IL_6ZM5_0491/A/2997:2999,
1/A/3061:3065		Isolated non-canonical cWW with bulges
homologous
IL_7A0S_089
IL_68118.4
IL_6ZM5_0501/A/2999:3000,
1/A/3058:3061		No text annotation
geometric
IL_4WF9_096
IL_44609.2
IL_6ZM5_0511/A/3008:3010,
1/A/3027:3031		No text annotation
IL_6ZM5_0521/A/3078:3079,
1/A/3088:3090		Single bulged A
geometric
IL_8UO6_001
IL_14190.2
IL_6ZM5_0531/A/3115:3117,
1/A/3139:3141		Isolated cWH basepair
geometric
IL_3D0M_002
NA
IL_6ZM5_0541/A/3119:3126,
1/A/3131:3137		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_6ZM5_0551/A/3148:3152,
1/A/3161:3163		C-loop
geometric
IL_7RQB_051
NA
IL_6ZM5_0561/A/3212:3213,
1/A/3227:3230		Multiple bulged bases
geometric
IL_5WTK_001
IL_71421.3
IL_6ZM5_0571/AA/649:651,
1/AA/667:668		Single bulged U
geometric
IL_1S03_005
IL_97561.5
IL_6ZM5_0581/AA/674:676,
1/AA/921:923		No text annotation
geometric
IL_1NBS_006
NA
IL_6ZM5_0591/AA/685:686,
1/AA/859:861		Single bulged A
geometric
IL_5J7L_002
NA
IL_6ZM5_0601/AA/690:692,
1/AA/822:823		Single bulged A
geometric
IL_4R4V_004
IL_14190.2
IL_6ZM5_0611/AA/694:696,
1/AA/819:820		Minor groove platform
geometric
IL_4LFB_004
IL_34520.3
IL_6ZM5_0621/AA/727:729,
1/AA/744:747		No text annotation
geometric
IL_4V9F_053
IL_49140.1
IL_6ZM5_0631/AA/729:732,
1/AA/742:744		Minor groove platform with extra cWW
geometric
IL_7RQB_031
NA
IL_6ZM5_0641/AA/756:761,
1/AA/779:786		Kink-turn with non-sequential stacking
geometric
IL_6CZR_123
NA
IL_6ZM5_0651/AA/762:765,
1/AA/777:778		Major groove platform; stack outside cWW
geometric
IL_1NTA_003
IL_74641.2
IL_6ZM5_1091/AA/762:766,
1/AA/775:778		No text annotation
IL_6ZM5_0661/AA/765:766,
1/AA/775:777		No text annotation
IL_6ZM5_0671/AA/830:832,
1/AA/855:856		Single bulged U
geometric
IL_4V9F_074
IL_97561.5
IL_6ZM5_0681/AA/834:838,
1/AA/852:853		C-loop
geometric
IL_5J7L_018
NA
IL_6ZM5_0691/AA/838:839,
1/AA/850:852		Single bulged A
geometric
IL_2QUX_002
IL_14190.2
IL_6ZM5_0701/AA/876:885,
1/AA/910:913		No text annotation
IL_6ZM5_0711/AA/887:893,
1/AA/900:908		Kink-turn related
geometric
IL_4V88_415
NA
IL_6ZM5_0721/AA/935:941,
1/AA/1133:1134		No text annotation
geometric
IL_5J7L_026
NA
IL_6ZM5_0731/AA/946:950,
1/AA/1044:1049		No text annotation
IL_6ZM5_1101/AA/952:968,
1/AA/1036:1042		No text annotation
IL_6ZM5_0741/AA/974:980,
1/AA/1008:1014		No text annotation
IL_6ZM5_0751/AA/982:984,
1/AA/1004:1006		Isolated non-canonical cWW pair
geometric
IL_4LFB_010
IL_01003.4
IL_6ZM5_0761/AA/986:988,
1/AA/999:1002		No text annotation
IL_6ZM5_0771/AA/1020:1022,
1/AA/1029:1030		Other IL
geometric
IL_3WBM_004
IL_18188.1
IL_6ZM5_0781/AA/1062:1066,
1/AA/1092:1093		Left turn
geometric
IL_5J7L_036
NA
IL_6ZM5_0791/AA/1067:1071,
1/AA/1087:1091		tSH-tHW-tHS
geometric
IL_5J7L_037
NA
IL_6ZM5_0801/AA/1109:1111,
1/AA/1130:1132		Isolated non-canonical cWW pair
geometric
IL_5Y7M_007
IL_01003.4
IL_6ZM5_0811/AA/1139:1147,
1/AA/1158:1164		No text annotation
IL_6ZM5_0821/AA/1175:1176,
1/AA/1477:1479		Single bulged A
geometric
IL_6CZR_147
NA
IL_6ZM5_0831/AA/1178:1180,
1/AA/1474:1475		Single bulged G
geometric
IL_6CZR_148
NA
IL_6ZM5_0841/AA/1186:1190,
1/AA/1464:1468		C-loop
geometric
IL_8HNT_002
IL_63596.12
IL_6ZM5_0851/AA/1208:1209,
1/AA/1355:1357		Minor groove platform
geometric
IL_7A0S_028
IL_34520.3
IL_6ZM5_0861/AA/1244:1252,
1/AA/1340:1345		No text annotation
IL_6ZM5_0871/AA/1253:1255,
1/AA/1338:1339		Single bulged C
geometric
IL_6ZDP_001
IL_05642.3
IL_6ZM5_0881/AA/1257:1261,
1/AA/1334:1336		Isolated cWS basepair
geometric
IL_4LFB_044
IL_82453.1
IL_6ZM5_0891/AA/1262:1263,
1/AA/1329:1333		Minor groove platform
geometric
IL_3RW6_003
IL_24264.1
IL_6ZM5_0901/AA/1265:1266,
1/AA/1325:1327		Single bulged A
geometric
IL_5J7L_049
NA
IL_6ZM5_0911/AA/1266:1268,
1/AA/1323:1325		Isolated non-canonical cWW pair
geometric
IL_5J7L_050
NA
IL_6ZM5_0921/AA/1274:1277,
1/AA/1298:1301		Double sheared
geometric
IL_1SAQ_002
NA
IL_6ZM5_0931/AA/1278:1279,
1/AA/1289:1297		No text annotation
geometric
IL_8S95_001
IL_25652.1
IL_6ZM5_0941/AA/1388:1393,
1/AA/1413:1418		No text annotation
IL_6ZM5_0951/AA/1483:1485,
1/AA/1566:1569		No text annotation
geometric
IL_4V88_463
NA
IL_6ZM5_0961/AA/1485:1488,
1/AA/1562:1566		No text annotation
geometric
IL_4V88_464
NA
IL_6ZM5_0971/AA/1489:1491,
1/AA/1559:1561		Isolated non-canonical cWW pair
geometric
IL_3GM7_006
IL_01003.4
IL_6ZM5_0981/AA/1491:1495,
1/AA/1554:1559		No text annotation
IL_6ZM5_0991/AA/1500:1504,
1/AA/1546:1549		UAA/GAN related
geometric
IL_2R8S_002
IL_77691.7
IL_6ZM5_1001/AA/1507:1510,
1/AA/1540:1543		Tandem non-canonical cWW pairs
geometric
IL_5TBW_128
NA
IL_6ZM5_1011/AA/1510:1511,
1/AA/1538:1540		No text annotation
geometric
IL_9E6Q_083
IL_05642.3
IL_6ZM5_1021/AA/1511:1514,
1/AA/1535:1538		No text annotation
IL_6ZM5_1031/AA/1516:1521,
1/AA/1529:1533		No text annotation
IL_6ZM5_1041/B/1627:1629,
1/B/1639:1641		Isolated non-canonical cWW pair
geometric
IL_4WF9_042
IL_01003.4

Problematic loops

#loop idProblemSequence
IL_6ZM5_038No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6ZM5_0011/A/1678:1681,
1/A/1771:1785,
1/A/1792:1797		No text annotation
J3_6ZM5_0151/A/1684:1722,
1/A/1729:1739,
1/A/1758:1767		No text annotation
J3_6ZM5_0021/A/1915:1921,
1/A/1983:1985,
1/A/2001:2004		No text annotation
homologous
J3_5J7L_038
NA
J3_6ZM5_0031/A/1930:1932,
1/A/1942:1946,
1/A/1970:1973		No text annotation
homologous
J3_4WF9_003
J3_69816.1
J3_6ZM5_0161/A/2153:2168,
1/A/2192:2197,
1/A/2212:2248		No text annotation
J3_6ZM5_0041/A/2336:2343,
1/A/2423:2427,
1/A/2436:2438		No text annotation
J3_6ZM5_0051/A/2343:2345,
1/A/2368:2375,
1/A/2421:2423		No text annotation
J3_6ZM5_0171/A/2846:2848,
1/A/2890:2900,
1/A/2909:2915		No text annotation
J3_6ZM5_0061/A/3004:3007,
1/A/3032:3034,
1/A/3048:3054		No text annotation
homologous
J3_4WF9_009
J3_32601.6
J3_6ZM5_0071/AA/677:680,
1/AA/866:872,
1/AA/917:920		No text annotation
J3_6ZM5_0081/AA/687:690,
1/AA/823:830,
1/AA/856:858		No text annotation
J3_6ZM5_0091/AA/973:974,
1/AA/1014:1020,
1/AA/1030:1031		No text annotation
J3_6ZM5_0101/AA/1192:1194,
1/AA/1428:1434,
1/AA/1456:1462		No text annotation
J3_6ZM5_0111/AA/1198:1201,
1/AA/1364:1366,
1/AA/1421:1424		No text annotation
homologous
J3_4LFB_003
J3_44359.1
J3_6ZM5_0121/AA/1210:1216,
1/AA/1227:1238,
1/AA/1351:1354		No text annotation
J3_6ZM5_0131/AA/1268:1273,
1/AA/1302:1308,
1/AA/1317:1323		No text annotation
J3_6ZM5_0201/AA/1366:1370,
1/AA/1382:1388,
1/AA/1418:1421		No text annotation
J4_6ZM5_0011/A/2314:2317,
1/A/2326:2327,
1/A/2450:2453,
1/A/2671:2673		No text annotation
J4_6ZM5_0021/A/2336:2345,
1/A/2368:2375,
1/A/2421:2427,
1/A/2436:2438		No text annotation
J4_6ZM5_0031/A/2492:2496,
1/A/2508:2513,
1/A/2537:2542,
1/A/2637:2642		No text annotation
J4_6ZM5_0041/A/2544:2546,
1/A/2569:2570,
1/A/2587:2596,
1/A/2630:2635		No text annotation
homologous
J4_5J7L_026
NA
J4_6ZM5_0051/A/3111:3113,
1/A/3143:3144,
1/A/3167:3174,
1/A/3195:3202		No text annotation
J4_6ZM5_0061/AA/698:701,
1/AA/708:715,
1/AA/800:802,
1/AA/811:817		No text annotation
J4_6ZM5_0071/AA/717:724,
1/AA/750:753,
1/AA/789:791,
1/AA/797:798		No text annotation
J4_6ZM5_0081/AA/941:943,
1/AA/1052:1057,
1/AA/1098:1109,
1/AA/1132:1133		No text annotation
homologous
J4_5J7L_003
NA
J4_6ZM5_0091/B/1608:1611,
1/B/1624:1626,
1/B/1642:1648,
1/B/1661:1663		No text annotation
J4_6ZM5_0121/w/5:10,
1/w/25:27,
1/w/43:49,
1/w/65:68		No text annotation
J4_6ZM5_0131/x/7:10,
1/x/25:27,
1/x/43:49,
1/x/65:66		tRNA junction
homologous
J4_5HR6_001
J4_95067.1
J5_6ZM5_0011/A/1827:1829,
1/A/1841:1845,
1/A/1858:1860,
1/A/2305:2306,
1/A/2680:2681		No text annotation
homologous
J5_9DFE_003
J5_43153.6
J5_6ZM5_0021/A/1865:1875,
1/A/1899:1903,
1/A/2019:2022,
1/A/2271:2275,
1/A/2290:2300		No text annotation
J5_6ZM5_0031/A/2720:2727,
1/A/2933:2940,
1/A/2987:2994,
1/A/3069:3075,
1/A/3093:3098		No text annotation
J5_6ZM5_0041/A/2737:2740,
1/A/2807:2810,
1/A/2822:2823,
1/A/2845:2846,
1/A/2915:2922		No text annotation
homologous
J5_7A0S_007
J5_39529.2
J6_6ZM5_0011/A/2027:2032,
1/A/2043:2045,
1/A/2095:2098,
1/A/2123:2127,
1/A/2138:2143,
1/A/2257:2266		No text annotation

Problematic loops

#loop idProblemSequence
J3_6ZM5_018No text annotation
J3_6ZM5_019No text annotation
J3_6ZM5_014No text annotation
J4_6ZM5_010No text annotation
J4_6ZM5_011No text annotation

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