HL_6ZM5_058

3D structure

PDB id

6ZM5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UAACUAA

Length

7 nucleotides

Bulged bases

6ZM5|1|AA|C|1525, 6ZM5|1|AA|U|1526

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZM5_058 not in the Motif Atlas

Geometric match to HL_5M3H_001

Geometric discrepancy: 0.273

The information below is about HL_5M3H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

6ZM5|1|AA|U|1522
6ZM5|1|AA|A|1523
6ZM5|1|AA|A|1524
6ZM5|1|AA|C|1525
6ZM5|1|AA|U|1526
6ZM5|1|AA|A|1527
6ZM5|1|AA|A|1528

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

28S ribosomal protein S34, mitochondrial

Chain AV

28S ribosomal protein S27, mitochondrial