HL_6ZM6_056

3D structure

PDB id

6ZM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

AUGAAACUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZM6_056 not in the Motif Atlas

Geometric match to HL_4FRN_005

Geometric discrepancy: 0.1325

The information below is about HL_4FRN_005

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

6ZM6|1|AA|A|1399
6ZM6|1|AA|U|1400
6ZM6|1|AA|G|1401
6ZM6|1|AA|A|1402
6ZM6|1|AA|A|1403
6ZM6|1|AA|A|1404
6ZM6|1|AA|C|1405
6ZM6|1|AA|U|1406
6ZM6|1|AA|U|1407

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AK

28S ribosomal protein S14, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial