3D structure

PDB id
6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CCUCUCCAGUCCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ZM7_023 not in the Motif Atlas
Geometric match to HL_2Y8W_001
Geometric discrepancy: 0.3665
The information below is about HL_2Y8W_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81100.2
Basepair signature
cWW
Number of instances in this motif group
3

Unit IDs

6ZM7|1|L5|C|1436
6ZM7|1|L5|C|1437
6ZM7|1|L5|U|1438
6ZM7|1|L5|C|1439
6ZM7|1|L5|U|1440
6ZM7|1|L5|C|1441
6ZM7|1|L5|C|1442
6ZM7|1|L5|A|1443
6ZM7|1|L5|G|1444
6ZM7|1|L5|U|1445
6ZM7|1|L5|C|1446
6ZM7|1|L5|C|1447
6ZM7|1|L5|G|1448

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LF
60S ribosomal protein L7
Chain LQ
60S ribosomal protein L18
Chain Lb
60S ribosomal protein L29

Coloring options:


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