HL_6ZM7_069

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

6ZM7|1|L5|U|4419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZM7_069 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.2606

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6ZM7|1|L5|C|4417
6ZM7|1|L5|G|4418
6ZM7|1|L5|U|4419
6ZM7|1|L5|U|4420
6ZM7|1|L5|C|4421
6ZM7|1|L5|A|4422
6ZM7|1|L5|U|4423
6ZM7|1|L5|A|4424
6ZM7|1|L5|G|4425

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain Lm

Ubiquitin-60S ribosomal protein L40