3D structure

PDB id
6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
AUUGCAAUUAUU
Length
12 nucleotides
Bulged bases
6ZM7|1|S2|A|1623
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ZM7_117 not in the Motif Atlas
Homologous match to HL_4V88_219
Geometric discrepancy: 0.1386
The information below is about HL_4V88_219
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_03273.1
Basepair signature
cWW-F-F-tWH-F-F-F
Number of instances in this motif group
3

Unit IDs

6ZM7|1|S2|A|1614
6ZM7|1|S2|U|1615
6ZM7|1|S2|U|1616
6ZM7|1|S2|G|1617
6ZM7|1|S2|C|1618
6ZM7|1|S2|A|1619
6ZM7|1|S2|A|1620
6ZM7|1|S2|U|1621
6ZM7|1|S2|U|1622
6ZM7|1|S2|A|1623
6ZM7|1|S2|U|1624
6ZM7|1|S2|U|1625

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SP
40S ribosomal protein S15
Chain SS
40S ribosomal protein S18
Chain ST
40S ribosomal protein S19
Chain Sd
40S ribosomal protein S29

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