HL_6ZME_002
3D structure
- PDB id
- 6ZME (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCUUUCACC
- Length
- 9 nucleotides
- Bulged bases
- 6ZME|1|CC|U|34
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZME_002 not in the Motif Atlas
- Homologous match to HL_5HR7_005
- Geometric discrepancy: 0.5007
- The information below is about HL_5HR7_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50006.5
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
6ZME|1|CC|G|31
6ZME|1|CC|C|32
6ZME|1|CC|U|33
6ZME|1|CC|U|34
6ZME|1|CC|U|35
6ZME|1|CC|C|36
6ZME|1|CC|A|37
6ZME|1|CC|C|38
6ZME|1|CC|C|39
Current chains
- Chain CC
- tRNA
Nearby chains
- Chain CE
- Coiled-coil domain-containing protein 124
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SF
- 40S ribosomal protein S5
- Chain SO
- 40S ribosomal protein S14
- Chain Sc
- 40S ribosomal protein S28
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