HL_6ZME_018

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAGAG

Length

7 nucleotides

Bulged bases

6ZME|1|L5|A|1254, 6ZME|1|L5|G|1256

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZME_018 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.262

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6ZME|1|L5|C|1252
6ZME|1|L5|G|1253
6ZME|1|L5|A|1254
6ZME|1|L5|A|1255
6ZME|1|L5|G|1256
6ZME|1|L5|A|1257
6ZME|1|L5|G|1258

Current chains

Chain L5

28S ribosomal RNA

Nearby chains