HL_6ZME_019

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6ZME|1|L5|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZME_019 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0702

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6ZME|1|L5|U|1317
6ZME|1|L5|C|1318
6ZME|1|L5|U|1319
6ZME|1|L5|U|1320
6ZME|1|L5|G|1321
6ZME|1|L5|A|1322
6ZME|1|L5|A|1323
6ZME|1|L5|A|1324
6ZME|1|L5|C|1325
6ZME|1|L5|A|1326

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain La

60S ribosomal protein L27a

Chain Le

60S ribosomal protein L32