HL_6ZME_027

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6ZME|1|L5|A|1630, 6ZME|1|L5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZME_027 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.095

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6ZME|1|L5|G|1627
6ZME|1|L5|C|1628
6ZME|1|L5|G|1629
6ZME|1|L5|A|1630
6ZME|1|L5|A|1631
6ZME|1|L5|A|1632
6ZME|1|L5|G|1633
6ZME|1|L5|A|1634
6ZME|1|L5|C|1635

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37