HL_6ZME_056
3D structure
- PDB id
- 6ZME (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 6ZME|1|L5|A|3760
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZME_056 not in the Motif Atlas
- Homologous match to HL_5TBW_049
- Geometric discrepancy: 0.1269
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6ZME|1|L5|G|3757
6ZME|1|L5|U|3758
6ZME|1|L5|A|3759
6ZME|1|L5|A|3760
6ZME|1|L5|C|3761
6ZME|1|L5|U|3762
6ZME|1|L5|A|3763
6ZME|1|L5|U|3764
6ZME|1|L5|G|3765
6ZME|1|L5|A|3766
6ZME|1|L5|C|3767
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain CE
- Coiled-coil domain-containing protein 124
- Chain CH
- Eukaryotic peptide chain release factor subunit 1
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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