HL_6ZME_079

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZME_079 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.219

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6ZME|1|L5|C|5021
6ZME|1|L5|U|5022
6ZME|1|L5|C|5023
6ZME|1|L5|C|5024
6ZME|1|L5|C|5025
6ZME|1|L5|U|5026
6ZME|1|L5|C|5027
6ZME|1|L5|G|5028

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8