HL_6ZME_097

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

6ZME|1|S2|U|540, 6ZME|1|S2|U|541

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZME_097 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3202

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6ZME|1|S2|C|539
6ZME|1|S2|U|540
6ZME|1|S2|U|541
6ZME|1|S2|U|542
6ZME|1|S2|C|543
6ZME|1|S2|G|544

Current chains

Chain S2

18S ribosomal RNA

Nearby chains