HL_6ZME_099

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZME_099 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.1066

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZME|1|S2|C|618
6ZME|1|S2|A|619
6ZME|1|S2|G|620
6ZME|1|S2|C|621
6ZME|1|S2|C|622
6ZME|1|S2|G|623

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain CF

Non-structural protein 1

Chain SX

40S ribosomal protein S23