HL_6ZME_121

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6ZME|1|L5|A|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZME_121 not in the Motif Atlas

Homologous match to HL_8P9A_139

Geometric discrepancy: 0.4323

The information below is about HL_8P9A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZME|1|L5|C|1978
6ZME|1|L5|A|1979
6ZME|1|L5|U|1980
6ZME|1|L5|G|1981
6ZME|1|L5|G|1982
6ZME|1|L5|A|1983
6ZME|1|L5|A|1984
6ZME|1|L5|G|1985
6ZME|1|L5|U|1986
6ZME|1|L5|C|1987
6ZME|1|L5|G|1988

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain CH

Eukaryotic peptide chain release factor subunit 1

Chain Lt

60S ribosomal protein L12