HL_6ZMI_010

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

6ZMI|1|L5|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMI_010 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1322

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

6ZMI|1|L5|G|230
6ZMI|1|L5|U|231
6ZMI|1|L5|G|232
6ZMI|1|L5|U|233
6ZMI|1|L5|G|234
6ZMI|1|L5|A|235
6ZMI|1|L5|G|236
6ZMI|1|L5|G|237
6ZMI|1|L5|C|238

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26