HL_6ZMI_019
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 6ZMI|1|L5|C|1325
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZMI_019 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.0619
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6ZMI|1|L5|U|1317
6ZMI|1|L5|C|1318
6ZMI|1|L5|U|1319
6ZMI|1|L5|U|1320
6ZMI|1|L5|G|1321
6ZMI|1|L5|A|1322
6ZMI|1|L5|A|1323
6ZMI|1|L5|A|1324
6ZMI|1|L5|C|1325
6ZMI|1|L5|A|1326
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain La
- 60S ribosomal protein L27a
- Chain Le
- 60S ribosomal protein L32
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