HL_6ZMI_029
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGGCCGAAACGAUCU
- Length
- 15 nucleotides
- Bulged bases
- 6ZMI|1|L5|A|1767
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZMI_029 not in the Motif Atlas
- Geometric match to HL_4V88_198
- Geometric discrepancy: 0.3194
- The information below is about HL_4V88_198
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
6ZMI|1|L5|G|1759
6ZMI|1|L5|G|1760
6ZMI|1|L5|G|1761
6ZMI|1|L5|C|1762
6ZMI|1|L5|C|1763
6ZMI|1|L5|G|1764
6ZMI|1|L5|A|1765
6ZMI|1|L5|A|1766
6ZMI|1|L5|A|1767
6ZMI|1|L5|C|1768
6ZMI|1|L5|G|1769
6ZMI|1|L5|A|1770
6ZMI|1|L5|U|1771
6ZMI|1|L5|C|1772
6ZMI|1|L5|U|1773
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LJ
- 60S ribosomal protein L11
- Chain SP
- 40S ribosomal protein S15
- Chain SS
- 40S ribosomal protein S18
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