3D structure

PDB id
6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GGGCCGAAACGAUCU
Length
15 nucleotides
Bulged bases
6ZMI|1|L5|A|1767
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ZMI_029 not in the Motif Atlas
Geometric match to HL_4V88_198
Geometric discrepancy: 0.3194
The information below is about HL_4V88_198
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_71121.1
Basepair signature
cWW-F
Number of instances in this motif group
24

Unit IDs

6ZMI|1|L5|G|1759
6ZMI|1|L5|G|1760
6ZMI|1|L5|G|1761
6ZMI|1|L5|C|1762
6ZMI|1|L5|C|1763
6ZMI|1|L5|G|1764
6ZMI|1|L5|A|1765
6ZMI|1|L5|A|1766
6ZMI|1|L5|A|1767
6ZMI|1|L5|C|1768
6ZMI|1|L5|G|1769
6ZMI|1|L5|A|1770
6ZMI|1|L5|U|1771
6ZMI|1|L5|C|1772
6ZMI|1|L5|U|1773

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LJ
60S ribosomal protein L11
Chain SP
40S ribosomal protein S15
Chain SS
40S ribosomal protein S18

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