HL_6ZMI_032

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

6ZMI|1|L5|A|1891, 6ZMI|1|L5|A|1892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMI_032 not in the Motif Atlas

Homologous match to HL_5TBW_026

Geometric discrepancy: 0.0639

The information below is about HL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6ZMI|1|L5|G|1886
6ZMI|1|L5|G|1887
6ZMI|1|L5|A|1888
6ZMI|1|L5|U|1889
6ZMI|1|L5|G|1890
6ZMI|1|L5|A|1891
6ZMI|1|L5|A|1892
6ZMI|1|L5|C|1893

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a