HL_6ZMI_040

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCCUCC

Length

6 nucleotides

Bulged bases

6ZMI|1|L5|C|2488, 6ZMI|1|L5|C|2489, 6ZMI|1|L5|U|2490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZMI_040 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3814

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6ZMI|1|L5|G|2487
6ZMI|1|L5|C|2488
6ZMI|1|L5|C|2489
6ZMI|1|L5|U|2490
6ZMI|1|L5|C|2491
6ZMI|1|L5|C|2492

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA