HL_6ZMI_070
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AGCAGAAU
- Length
- 8 nucleotides
- Bulged bases
- 6ZMI|1|L5|G|4475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZMI_070 not in the Motif Atlas
- Homologous match to HL_5TBW_062
- Geometric discrepancy: 0.0697
- The information below is about HL_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_79150.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
6ZMI|1|L5|A|4474
6ZMI|1|L5|G|4475
6ZMI|1|L5|C|4476
6ZMI|1|L5|A|4477
6ZMI|1|L5|G|4478
6ZMI|1|L5|A|4479
6ZMI|1|L5|A|4480
6ZMI|1|L5|U|4481
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LH
- 60S ribosomal protein L9
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
Coloring options: